Stellaris RNA FISH citation center
Find peer reviewed publications citing Stellaris™ RNA FISH probe sets sorted by product, application, model organism and more.
The following peer-reviewed customer publications cite Stellaris RNA FISH products and/or services. Over 33% of publications citing Stellaris RNA FISH publish in Cell, Nature, or Science speaking volumes about the quality of our product and the thought leadership of our customers.
825
Publications
264
Nature, Cell or Science
Research focus
Papers labeled as Nature, Science, or Cell include sub-groups of these publishing groups such as communications, letters, methods etc.
*Updated for 2016
Stellaris scoop research highlights
Stellaris for study in human pathologies
Primary Human Placental Trophoblasts are Permissive for Zika Virus (ZIKV) Replication.
Kjersti Aagaard et al. Nature Scientific Reports. 2017.
Gene activation of SMN by selective disruption of lncRNA-mediated recruitment of PRC2 for the treatment of spinal muscular atrophy.
Caroline Woo et al. PNAS PLUS. 2017.
LncBRM initiates YAP1 signalling activation to drive self-renewal of liver cancer stem cells.
Pingping Zhu et al. Nature Communications. 2016.
ANRIL: A Regulator of VEGF in Diabetic Retinopathy.
Anu Thomas et al. Investigative Ophthalmology & Visual Science. 2017.
See our professionally designed Stellaris RNA FISH probe sets by searching our DesignReady RNA FISH probe sets, including our Zika probe sets.
Comprehensive Publication List
Research focus
piRNA-mediated regulation of transposon alternative splicing in the soma and germ line
Teixeiraet al. Nature Letter. 2017
The Germline-Specific Factor OEF-1 Facilitates Coordinated Progression Through Germ Cell Development in Caenorhabditis elegans
High ImpactDynamics of lineage commitment revealed by single-cell transcriptomics of differentiating embryonic stem cells
van-Oudenaardenet al. Nature Communications. 2017
High Impact, PlantCell-Size-Dependent Transcription of FLC and Its Antisense Long Non-coding RNA COOLAIR Explain Cell-to-Cell Expression Variation
Ietswaartet al. Cell Systems. 2017
miRNAs cooperate in apoptosis regulation during C. elegans development
Sherrardet al. Genes and Development. 2017.
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Sexually dimorphic control of gene expression in sensory neurons regulates decision-making behavior in C. elegans
Hilbertet al. eLIFE. 2017.
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Long non-coding RNA Linc-RAM enhances myogenic differentiation by interacting with MyoD
Yuet al. Nature Communications. 2017
Homeodomain protein Otp affects developmental neuropeptide switching in oxytocin neurons associated with a long-term effect on social behavior
sm“FISH”ing for Hedgehog
Drummondet al. Journal of Investigative Dermatology. 2017
High ImpactDynamic mRNA Transport and Local Translation in Radial Glial Progenitors of the Developing Brain
Pilazet al. Cell Current Biology. 2016.
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A novel isoform of Drosophila non-muscle Tropomyosin interacts with Kinesin-1 and functions in mRNA localization
Veeranan-Karmegamet al. Journal of Cell Science. 2016.
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Transient transcription in the early embryo sets an epigenetic state that programs postnatal growth
Greenberget al. Nature Genetics. 2016
The UT family of MHC class I loci unique to non-eutherian mammals has limited polymorphism and tissue specific patterns of expression in the opossum
Krasnecet al. BMC Immunology. 2016.
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bicoid mRNA localises to the Drosophila oocyte anterior by random Dyneinmediated transport and anchoring
C. elegans GLP-1/Notch activates transcription in a probability gradient across the germline stem cell pool
Leeet al. eLIFE. 2016.
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DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells
Daneshvaret al. Cell Reports. 2016.
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Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
Temporal regulation of epithelium formation
Von-Stetinaet al. BioRxiv. 2016.
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Patched Receptors Sense, Interpret, and Establish an Epidermal Hedgehog Signaling Gradient
Adolpheet al. Journal of Investigative Dermatology. 2016
Meis/UNC-62 isoform dependent regulation of CoupTF-II/UNC-55 and GABAergic motor neuron subtype differentiation
Campbellet al. Developmental Biology. 2016.
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Evolution of New cis-Regulatory Motifs Required for Cell-Specific Gene Expression in Caenorhabditis
Barkoulaset al. PLOS Genetics. 2016.
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Drosophila Wnt and STAT Define Apoptosis- Resistant Epithelial Cells for Tissue Regeneration after Irradiation
Vergheseet al. PLOS Biology. 2016.
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Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation
Chenet al. Genome Research. 2016.
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Dynamics of lineage commitment revealed by single-¬cell transcriptomics of differentiating embryonic stem cells
High ImpactAn Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline
Frokjaer-Jensenet al. Cell. 2016.
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Memory of cell shape biases stochastic fate decision-making despite mitotic rounding
Akanumaet al. Nature Communications. 2016.
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Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways
Simset al. eLIFE. 2016.
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Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways
Simset al. eLIFE. 2016.
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The Wnt pathway limits BMP signaling outside of the germline stem cell niche in Drosophila ovaries
Mottier-Pavieet al. Developmental Biology. 2016.
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Emerging roles for long noncoding RNAs in skeletal biology and disease
Huynhet al. Connective Tissue Research. 2016
A system to study mechanisms of neuromuscular junction development and maintenance
Vilmontet al. Development. 2016.
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Clustered nuclei maintain autonomy and nucleocytoplasmic ratio control in a syncytium
Dundonet al. MBoC. 2016.
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Divergent lncRNAs Regulate Gene Expression and Lineage Differentiation in Pluripotent Cells
Luoet al. Cell Stem Cell. 2016.
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A simple and rapid method for combining fluorescent in situ RNA hybridization (FISH) and immunofluorescence in the C. elegans germline
Topologically associated domains enriched for lineage specific genes reveal expression-dependent nuclear topologies during myogenesis
Neemset al. PNAS PLUS. 2016.
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Single-cell differences in matrix gene expression do not predict matrix deposition
Coteet al. Nature Communications. 2016
Visualizing allele-specific expression in single cells reveals epigenetic mosaicism in an H19 loss-of-imprinting mutant
Ginartet al. Genes and Development. 2016.
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Overlapping cell population expression profiling and regulatory inference in C. elegans
Burdiket al. BMC Genomics. 2016
Structure–function analysis of myomaker domains\ required for myoblast fusion
Millayet al. PNAS. 2016.
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Mutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements
Duet al. Developmental Biology. 2016
Germ Plasm Biogenesis—An Oskar-Centric Perspective
Lehmannet al. Current Topics in Developmental Biology. 2016
High ImpactRNase P protein subunit Rpp29 represses histone H3.3 nucleosome deposition
Newhartet al. Molecular Biology Cell . 2016
Unequal distribution of 16S mtrRNA at the 2-cell stage regulates cell lineage allocations in mouse embryos
Zheng et al. Reproduction. 2016.
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Brain regions and molecular pathways responding to food reward type and value in honey bees
Matthew S McNeill et al. Genes, Brain, and Behavior. 2016.
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Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos
Stapel et al. Development. 2015.
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LncRNA-HIT Functions as an Epigenetic Regulator of Chondrogenesis through Its Recruitment of p100/CBP Complexes
Carlson et al. PLOS Genetics. 2015.
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The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming
Durruthy-Durruthy et al. Nature Genetics. 2015.
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Single-cell messenger RNA sequencing reveals rare intestinal cell types
Antagonist Xist and Tsix co-transcription during mouse oogenesis and maternal Xist expression during pre-implantation development calls into question the nature of the maternal imprint on the X chromosome
Deuve et al. Epigenetics. 2015
Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells
Kumar et al. Genome Research. 2015.
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piRNA-guided slicing of transposon transcripts enforces their transcriptional silencing via specifying the nuclear piRNA repertoire
Senti et al. Cold Spring Harbor Laboratory Press. 2015.
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MED GATA factors promote robust development of the C. elegans endoderm
Maduroet al. Developmental Biology. 2015
Single Cell Analysis Reveals Concomitant Transcription of Pluripotent and Lineage Markers During the Early Steps of Differentiation of Embryonic Stem Cells
Lanctôt et al. Stem Cells. 2015.
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G1/S Inhibitors and the SWI/SNF Complex Control Cell-Cycle Exit during Muscle Differentiation
Ruijtenberg et al. Cell. 2015.
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Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue
Shah et al. Journal of Cell Science. 2015
DAZL regulates Tet1 translation in murine embryonic stem cells
Wellinget al. EMBO reports. 2015
High ImpactAn alternative pluripotent state confers interspecies chimaeric competency
Wu et al. Nature. 2015.
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Single-molecule analysis of myocyte differentiation reveals bimodal lineage commitment†
Gibson et al. Royal Society of Chemistry. 2015
Asymmetric Transcript Discovery by RNA-seq in C. elegans Blastomeres Identifies neg-1, a Gene Important for Anterior Morphogenesis
Osborne Nishimura et al. PLOS Genetics. 2015.
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CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline
Campbell et al. The Company of Biologists. 2015.
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Voxel-based analysis of the immediate early gene, c-jun, in the honey bee brain after a sucrose stimulus
McNeill et al. Insect Molecular Biology. 2015.
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Single-Cell XIST Expression in Human Preimplantation Embryos and Newly Reprogrammed Female Induced Pluripotent Stem Cells
Briggs et al. Stem Cells. 2015.
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Licensing of Primordial Germ Cells for Gametogenesis Depends on Genital Ridge Signaling
The Bicoid Class Homeodomain Factors ceh-36/OTX and unc-30/PITX Cooperate in C. elegans Embryonic Progenitor Cells to Regulate Robust Development
Walton et al. PLOS Genetics. 2015
Multi-Scale Imaging and Informatics Pipeline for In Situ Pluripotent Stem Cell Analysis
Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically-disordered proteins in C. elegans
Wang et al. eLIFE. 2014.
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Novel Small Leucine-Rich Protein Chondroadherin-like (CHADL) is Expressed in Cartilage and Modulates Chondrocyte Differentiation*
High ImpactA Predictive Model of Bifunctional Transcription Factor Signaling during Embryonic Tissue Patterning
Junker et al. Cell, Developmental Cell. 2014
High ImpactStochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells
Ochiai et al. Nature Scientific Reports. 2014.
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Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast
Guzman-ayala et al. The Company of Biologists. 2014
Quantification of pre-mRNA escape rate and synergy in splicing
Bonde et al. Nucleic Acids Research. 2014.
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Cell Intrinsic Modulation of Wnt Signaling Controls Neuroblast Migration in C. elegans
Mentink et al. Developmental Cell. 2014
The long noncoding RNA Neat1 is required for mammary gland development and lactation
Standaert et al. Cold Spring Harbor Laboratory Press. 2014.
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Rejuvenation of Meiotic Cohesion in Oocytes during Prophase I Is Required for Chiasma Maintenance and Accurate Chromosome Segregation
Weng et al. PLOS Genetics. 2014.
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A Gene Regulatory Network Controls the Binary Fate Decision of Rod and Bipolar Cells in the Vertebrate Retina
Wang et al. Developmental Cell. 2014.
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SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans
Yucel et al. Developmental Biology. 2014
The exon junction complex controls transposable element activity by ensuring faithful splicing of the piwi transcript
Malone et al. Cold Spring Harbor Laboratory Press. 2014.
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Lgr5 marks stem/progenitor cells in ovary and tubal epithelia
Ng et al. Nature Cell Biology. 2014.
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The embryo as a laboratory: Quantifying transcription in Drosophila
Gregor et al. Cell Trends in Genetics. 2014
High ImpactDefining Estrogenic Mechanisms of Bisphenol A Analogs through High Throughput Microscopy-Based Contextual Assays
Stossi et al. Cell Chemistry & Biology. 2014.
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The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila
SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans
Yücel et al. Developmental Biology, Elsevier. 2014.
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Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta
Finn et al. Developmental Biology. 2014
Spermatid Cyst Polarization in Drosophila Depends upon apkc and the CPEB Family Translational Regulator orb2
Xu et al. PLOS Genetics. 2014.
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Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency
Abranches et al. Development, The Company of Biologists. 2014.
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Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development
Aberrant Patterns of X Chromosome Inactivation in a New Line of Human Embryonic Stem Cells Established in Physiological Oxygen Concentrations
Oliveira Georges et al. Stem Cell Rev and Rep. 2014.
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Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta
Finn et al. Developmental Biology, Elsevier. 2014.
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Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development
Paralkar et al. Red Cells, Iron, and Erythropoiesis. 2014.
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Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
Hacisuleyman et al. Nature structural & molecular biology. 2014.
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Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation
Alvarez-Dominguezet al. Blood Journal. 2014
High ImpactLuminal signalling links cell communication to tissue architecture during organogenesis
Durdu et al. Nature Letter. 2014.
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Mitochondria Coordinate Sites of Axon Branching through Localized Intra-axonal Protein Synthesis
Spillane et al. Cell. 2013.
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Defined Human Pluripotent Stem Cell Culture Enables Highly Efficient Neuroepithelium Derivation Without Small Molecule Inhibitors
Lippmann et al. Stem Cells. 2013.
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Histone Methylation Restrains the Expression of Subtype-Specific Genes during Terminal Neuronal Differentiation in Caenorhabditis elegans
Zheng et al. PLOS Genetics. 2013.
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Feedback Control of Gene Expression Variability in the Caenorhabditis elegans Wnt Pathway
High ImpactFeedback Control of Gene Expression Variability in the Caenorhabditis elegans Wnt Pathway
Regulation of maternal Wnt mRNA translation in C. elegans embryos
High ImpactDampening of expression oscillations by synchronous regulation of a microRNA and its target
Kimet al. Nature Genetics. 2013
High ImpactNonautonomous Regulation of Neuronal Migration by Insulin Signaling, DAF-16/FOXO, and PAK-1
Kennedy et al. Cell Article. 2013.
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Stochastic Cytokine Expression Induces Mixed T Helper Cell States
Fang et al. PLOS Biology. 2013
High ImpactProtein Aggregation Behavior Regulates Cyclin Transcript Localization and Cell-Cycle Control
Lee et al. Developmental Cell. 2013.
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Injury-induced BMP signaling negatively regulates Drosophila midgut homeostasis
Guo et al. Journal of Cell Biology. 2013
Single-cell gene expression profiling reveals functional heterogeneity of undifferentiated human epidermal cells
Tan et al. Development and Stem Cells. 2013.
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Deconvolving the roles of Wnt ligands and receptors in sensing and amplification
Tan et al. Molecular Systems Biology. 2013
High ImpactEmbryonic Priming of a miRNA Locus Predetermines Postmitotic Neuronal Left/Right Asymmetry in C. elegans
Cochellaet al. Cell. 2012.
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The CPEB Protein Orb2 Has Multiple Functions during Spermatogenesis in Drosophila melanogaster
Xu et al. PLOS Genetics. 2012.
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Removal of Polycomb Repressive Complex 2 Makes C. elegans Germ Cells Susceptible to Direct Conversion into Specific Somatic Cell Types
Patelet al. Cell Reports. 2012
Quadraplex MultiplexA continuum of transcriptional identities visualized by combinatorial fluorescent in situ hybridization
High ImpactLgr5+ve Stem/Progenitor Cells Contribute to Nephron Formation during Kidney Development
Barkeret al. Cell Reports. 2012
High ImpactExtradenticle and Homothorax Control Adult Muscle Fiber Identity in Drosophila
Bryantsevet al. Developmental Cell. 2012
High ImpactGlobal Analysis of RNA Secondary Structure in Two Metazoans
The P granule component PGL-1 promotes the localization and silencing activity of the PUF protein FBF-2 in germline stem cells
Voronina et al. Development and Stem Cells. 2012.
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Identification of molecular compartments and genetic circuitry in the developing mammalian kidney
High ImpactPredicting mutation outcome from early stochastic variation in genetic interaction partners
Burgaet al. Nature Letter. 2011.
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Shared gene expression in distinct neurons expressing common selector genes
Topalidou et al. PNAS. 2011.
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MAB-10/NAB acts with LIN-29/EGR to regulate terminal differentiation and the transition from larva to adult in C. elegans
Harriset al. Development. 2011
Neuroblast migration along the anteroposterior axis of C. elegans is controlled by opposing gradients of Wnts and a secreted Frizzled-related protein
Harterinket al. Development. 2011
High ImpactVariability in gene expression underlies incomplete penetrance
Rajet al. Nature Article. 2010
High ImpactVariability in gene expression underlies incomplete penetrance
Up-regulation of ceRNA TINCR by SP1 contributes to tumorigenesis in breast cancer
The lncRNA H19 positively affects the tumorigenic properties of glioblastoma cells and contributes to NKD1 repression through the recruitment of EZH2 on its promoter
Long Non-coding MIR205HG Depletes Hsa-miR-590-3p Leading to Unrestrained Proliferation in Head and Neck Squamous Cell Carcinoma
DiAgostinoet al. Theranostics. 2018
High ImpactCRTC1-MAML2 fusion-induced lncRNA LINC00473 expression maintains the growth and survival of human mucoepidermoid carcinoma cells
Wuet al. Nature Oncogene. 2018
High ImpactPixelated spatial gene expression analysis from tissue
Bashiret al. Nature Communications. 2018
High ImpactOncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA
High ImpactRare cell variability and drug-induced reprogramming as a mode of cancer drug resistance
High ImpactA slow-cycling subpopulation of melanoma cells with highly invasive properties
The circRNA interactome–innovative hallmarks of the intra- and extracellular radiation response
Atkinsonet al. Oncotarget. 2017
High ImpactRare cell variability and drug-induced reprogramming as a mode of cancer drug resistance
Shafferet al. Nature Letter. 2017
High ImpactThe long noncoding RNA SPRIGHTLY acts as an intranuclear organizing hub for pre-mRNA molecules
Pereraet al. Science Advances. 2017
PRAME as a Potential Target for Immunotherapy in Metastatic Uveal Melanoma
Gezginet al. JAMA Ophthalmol. 2017
Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization
Annaratoneet al. Oncotarget. 2017
A single cell level measurement of StAR expression and activity in adrenal cells
Leeet al. Molecular and Cellular Endocrinology. 2017.
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Acquired CYP19A1 amplification is an early specific mechanism of aromatase inhibitor resistance in ERα metastatic breast cancer
Magnaniet al. Nature Genetics. 2017
sm“FISH”ing for Hedgehog
Drummondet al. Journal of Investigative Dermatology. 2017
Potential of long non-coding RNAs in cancer patients: From biomarkers to therapeutic targets
Guptaet al. IJC International Journal of Cancer. 2016
High ImpactLncBRM initiates YAP1 signalling activation to drive self-renewal of liver cancer stem cells
Zhuet al. Nature Communications. 2016
High ImpactMacrophage-dependent tumor cell transendothelial migration is mediated by Notch1/MenaINVinitiated invadopodium formation
Pignatelliet al. Nature Scientific Reports. 2016.
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Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells
Linet al. Open Biology. 2016.
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Epigenetic inactivation of the p53-induced long noncoding RNA TP53 target 1 in human cancer
Diaz-Lagareset al. PNAS PLUS. 2016.
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Long noncoding RNA ZEB1-AS1 acts as an oncogene in osteosarcoma by epigenetically activating ZEB1
Liuet al. American Journal of Translational Research. 2016.
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The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression
Niknafset al. Nature Communications. 2016
Long Noncoding RNA lncCAMTA1 Promotes Proliferation and Cancer Stem Cell-Like Properties of Liver Cancer by Inhibiting CAMTA1
Dinget al. International Journal of Molecular Sciences. 2016.
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Temporal regulation of epithelium formation
Von-Stetinaet al. BioRxiv. 2016.
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Patched Receptors Sense, Interpret, and Establish an Epidermal Hedgehog Signaling Gradient
Adolpheet al. Journal of Investigative Dermatology. 2016
The emerging role of long non-coding RNAs in cutaneous melanoma
Leucciet al. Pigment Cell Melanoma. 2016
High ImpactModulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer
Haiyang Guo et al. Nature Genetcs. 2016
Role of mir-15a/16-1 in early B cell development in a mouse model of chronic lymphocytic leukemia
Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells
Moenkeet al. bioRxiv. 2016.
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Regulation of star by the n-terminal Domain and coinduction of siK1 and Tis11b/Znf36l1 in single cells
Leeet al. Frontiers in Endocrinology. 2016.
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LncSox4 promotes the self-renewal of liver tumour-initiating cells through Stat3-mediated Sox4 expression
Chenet al. Nature Communications. 2016
Global transcript structure resolution of high gene density genomes through multi-platform data integration
O’Gradyet al. Nucleic Acids Research. 2016.
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Long noncoding RNA GIHCG promotes hepatocellular carcinoma progression through epigenetically regulating miR-200b/a/429
Suiet al. Journal of Molecular Medicine. 2016.
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p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity
Adriaenset al. Nature Medicine. 2016.
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Prognostic value of a newly identified MALAT1 alternatively spliced transcript in breast cancer
Meseureet al. British Journal of Cancer. 2016.
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cAMP/CREB-regulated LINC00473 marks LKB1- inactivated lung cancer and mediates tumor growth
Chenet al. The Journal of Clinical Investigation. 2016.
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Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions
Stojicet al. Nature Communications. 2016.
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RNase P protein subunit Rpp29 represses histone H3.3 nucleosome deposition
Newhartet al. Molecular Biology Cell . 2016
High ImpactStellaris® RNA Fluorescence In Situ Hybridization for the Simultaneous Detection of Immature and Mature Long Noncoding RNAs in Adherent Cells
Post-transcriptional Modifications Contribute to the Upregulation of Cyclin D2 in Multiple Myeloma
Misiewicz-Krzeminska et al. Clinical Cancer Research. 2016.
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A Polyadenylation-Dependent 3' End Maturation Pathway Is Required for the Synthesis of the Human Telomerase RNA
Nguyen et al. Cell . 2015.
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p53 genes function to restrain mobile elements
Wylieet al. Genes & Development. 2015.
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Telomerase RNA stem terminus element affects template boundary element function, telomere sequence, and shelterin binding
Webb et al. PNAS. 2015.
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Dclk1+ small intestinal epithelial tuft cells display the hallmarks of quiescence and self-renewal
Chandrakesan et al. Oncotarget. 2015
Dclk1+ small intestinal epithelial tuft cells display the hallmarks of quiescence and self-renewal
Chandrakesanet al. Oncotarget. 2015
High ImpactNiche appropriation by Drosophila intestinal stem cell tumours
Patel et al. Nature Cell Biology. 2015.
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Hypoxia Up-Regulates Galectin-3 in Mammary Tumor Progression and Metastasis
Oliveira et al. PLOS ONE. 2015.
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Mutant p53 accumulates in cycling and proliferating cells in the normal tissues of p53 R172H mutant mice
High ImpactG1/S Inhibitors and the SWI/SNF Complex Control Cell-Cycle Exit during Muscle Differentiation
Ruijtenberg et al. Cell. 2015.
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Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma
Grosso et al. eLife. 2015.
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CArG-driven GADD45α activated by resveratrol inhibits lung cancer cells
Shi et al. Genes & Cancer. 2015.
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Functional Characterization of Long Noncoding RNA Lnc_bc060912 in Human Lung Carcinoma Cells
Luo et al. Biochemistry . 2015.
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The Long Noncoding RNA lncTCF7 Promotes Self-Renewal of Human Liver Cancer Stem Cells through Activation of Wnt Signaling
Wang et al. Cell Stem Cell. 2015
High ImpactGenome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA
The structure of human SFPQ reveals a coiled-coil mediated polymer essential for functional aggregation in gene regulation
Lee et al. Nucleic Acids Research. 2015.
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Molekulárna cytogenetika v problematike familiárnych malignít
Konečný et al. Hlavná téma. 2015
High ImpactGenome-wide analysis of the human p53 transcriptional network unveils a lncRNA tumour suppressor signature
S'anchez et al. Nature Communications. 2014
High ImpactProteostatic Control of Telomerase Function through TRiC-Mediated Folding of TCAB1
Freund et al. Cell. 2014.
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Inter- and intratumoral heterogeneity of BCL2 correlates with IgH expression and prognosis in follicular lymphoma
Barreca et al. Nature Blood Cancer Journal. 2014
Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity
Gordon et al. Nucleic Acids Research. 2014
Kinetic competition during the transcription cycle results in stochastic RNA processing
Coulon et al. eLIFE, Biophysics and structural biology. 2014.
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Benzyl butyl phthalate induces migration, invasion, and angiogenesis of Huh7 hepatocellular carcinoma cells through nongenomic AhR/G-protein signaling
Tsai et al. BMC Cancer. 2014.
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Defining Estrogenic Mechanisms of Bisphenol A Analogs through High Throughput Microscopy-Based Contextual Assays
Stossi et al. Cell Chemistry & Biology. 2014.
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Therapeutic implications of activation of the host gene (Dleu2) promoter for miR-15a/16-1 in chronic lymphocytic leukemia
High ImpactLincRNA-p21 Activates p21 In cis to Promote Polycomb Target Gene Expression and to Enforce the G1/S Checkpoint
Dimitrova et al. Molecular Cell. 2014.
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The role of high cell density in the promotion of neuroendocrine transdifferentiation of prostate cancer cells
Pernicova et al. Molecular Cancer. 2014.
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Inhibition of intestinal tumor formation by deletion of the DNA methyltransferase 3a
Weis et al. Nature Oncogene. 2014
Tumor endothelial marker 1–specific DNA vaccination targets tumor vasculature
Facciponte et al. The Journal of Clinical Investigation. 2014
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Discovery of J Chain in African Lungfish (Protopterus dolloi, Sarcopterygii) Using High Throughput Transcriptome Sequencing: Implications in Mucosal Immunity
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An NS-segment exonic splicing enhancer regulates influenza A virus replication in mammalian cells
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New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription
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Phosphatidylserine Vesicles Enable Efficient En Bloc Transmission of Enteroviruses
Microbe ScreenA metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts
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RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev–Rev response element complex
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MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production
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Global Bidirectional Transcription of the Epstein-Barr Virus Genome 1 During Reactivation
O’Grady et al. Journal of Virology. 2014.
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Small alveolar macrophages are infected preferentially by HIV and exhibit impaired phagocytic function
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Identification of a novel multiple kinase inhibitor with potent antiviral activity against influenza virus by reducing viral polymerase activity
Sasaki et al. Biochemical and Biophysical Research Communications. 2014
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Characterization of novel inhibitors of HIV-1 replication that function via alteration of viral RNA processing and rev function
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Nuclear import of APOBEC3F-labeled HIV-1 preintegration complexes
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A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity
Ashe et al. eLIFE. 2013.
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Orsay, Santeuil and Le Blanc viruses primarily infect intestinal cells in Caenorhabditis nematodes
Franz et al. Virology, Elsevier. 2013.
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IFI16 senses DNA forms of the lentiviral replication cycle and controls HIV-1 replication
Jakobsen et al. PNAS PLUS. 2013
Colocalization of Different Influenza Viral RNA Segments in the Cytoplasm before Viral Budding as Shown by Single-molecule Sensitivity FISH Analysis
Chou et al. PLOS Pathogens. 2013.
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Digoxin Suppresses HIV-1 Replication by Altering Viral RNA Processing
Wong et al. PLOS Pathogens. 2013.
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Microsporidian Infection in a Free-Living Marine Nematode
Ardila-Garciaet al. Eukaryotic Cell. 2012.
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The Influenza A Virus PB2, PA, NP, and M Segments Play a Pivotal Role during Genome Packaging
One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis
Dynamics of protein noise can distinguish between alternate sources of gene-expression variability
Transgenerational dynamics of rDNA copy number in Drosophila male germline stem cells
Age-Dependent Neuroendocrine Signaling from Sensory Neurons Modulates the Effect of Dietary Restriction on Longevity of Caenorhabditis elegans
Fletcheret al. PLOS Genetics. 2017
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Structural and Functional Recovery of Sensory Cilia in C. elegans IFT Mutants upon Aging
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A C. elegans Thermosensory Circuit Regulates Longevity through crh-1/CREB-Dependent flp-6 Neuropeptide Signaling
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Circadian RNA expression elicited by 3’- UTR IRAlu-paraspeckle associated elements
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Iyeret al. Nucleic Acids Research. 2016
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In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p
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DksA involvement in transcription fidelity buffers stochastic epigenetic change
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The Bicoid Class Homeodomain Factors ceh-36/OTX and unc-30/PITX Cooperate in C. elegans Embryonic Progenitor Cells to Regulate Robust Development
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Schwabe et al. Nature Communications. 2014
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Gregor et al. Cell Trends in Genetics. 2014
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Quadraplex MultiplexA continuum of transcriptional identities visualized by combinatorial fluorescent in situ hybridization
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The Caenorhabditis elegans Protein FIC-1 Is an AMPylase That Covalently Modifies Heat-Shock 70 Family Proteins, Translation Elongation Factors and Histones
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High ImpactNuclear Retention of mRNA in Mammalian Tissues
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In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p
Smith et al. The Journal of Cell Biology. 2015
Endoplasmic reticulum stress increases AT1R mRNA expression via TIA-1-dependent mechanism
Backlund et al. Nucleic Acids Research. 2015.
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Rate control in yeast protein synthesis at the population and single-cell levels
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Mazumder et al. Molecular Cell Biology. 2013
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Shihet al. Nucleic Acids Research. 2011
De novo translation initiation on membrane-bound ribosomes as a mechanism for localization of cytosolic protein mRNAs to the endoplasmic reticulum
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Torreet al. Cell Systems. 2018
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Titlowet al. Methods in Molecular Biology. 2018
PlantGaining insight into plant gene transcription using smFISH
Duncanet al. Transcription. 2017
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Jefcoateet al. Frontiers in Endocrinology. 2017
Evaluation of fluorescence in situ hybridization techniques to study long non-coding RNA expression in cultured cells
Soareset al. Nucleic Acids Research. 2017
mRNA detection in budding yeast with single fluorophores
Kimet al. Nucleic Acids Research. 2017
PlantSingle Molecule RNA FISH in Arabidopsis Root Cells
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seqFISH, High ImpactSynthetic recording and in situ readout of lineage information in single cells
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RNA LOCALIZATION Finding FISH in a small pond
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Leeet al. Molecular and Cellular Endocrinology. 2016
Methods for studying RNA localization in bacteria
Optical Clearing Delivers Ultrasensitive Hyperspectral Dark-Field Imaging for Single- Cell Evaluation
Irudayarajet al. ACS Nano. 2016
CLARITY, High ImpactMultiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution
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Long Non-Coding RNAs
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FLOW-FISHSingle-Cell Cytokine Gene Expression in Peripheral Blood Cells Correlates with Latent Tuberculosis Status
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Lee et al. Methods, Elsevier. 2015.
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Zhang et al. Nature Scientific Reports. 2015
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Shaffer et al. Royal Society of Chemistry. 2015
Non-coding RNAs: Epigenetic regulators of bone development and homeostasis
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Spatially resolved, highly multiplexed RNA profiling in single cells
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Synonymous modification results in highfidelity gene expression of repetitive protein and nucleotide sequences
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Aro: a machine learning approach to identifying single molecules and estimating classification error in fluorescence microscopy images
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Whole-mount single molecule FISH method for zebrafish embryo
Knockdown of Nuclear-Retained Long Noncoding RNAs Using Modifi ed DNA Antisense Oligonucleotides
lncRNA probe set validationLocalization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
Cabili et al. GenomeBiology. 2015
RNA Fluorescence In Situ Hybridization in Cultured Mammalian Cells
Tripathi et al. Methods in Molecular Biology. 2015.
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Visualization of lncRNA by Single-Molecule Fluorescence In Situ Hybridization
Dunagin et al. Methods in Molecular Biology Springer Protocols. 2015
Multi-Scale Imaging and Informatics Pipeline for In Situ Pluripotent Stem Cell Analysis
Self-digitization microfluidic chip for absolute quantification of mRNA in single cells
Thompson et al. Analytical Chemistry. 2014
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Yang et al. Cell Resource. 2014
High ImpactThe embryo as a laboratory: Quantifying transcription in Drosophila
Gregor et al. Cell Trends in Genetics. 2014
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Toran et al. Nature Cell Research. 2014.
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Fusion FISH Imaging: Single-Molecule Detection of Gene Fusion Transcripts In Situ
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Image-based transcriptomics in thousands of single human cells at single-molecule resolution
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Turbo FISH, SNP FISHTurbo FISH: A Method for Rapid Single Molecule RNA FISH
SNP-FISH, High ImpactAllele-specific detection of single mRNA molecules in situ
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Regulation of Mechanosensation in C. elegans through Ubiquitination of the MEC-4 Mechanotransduction Channel
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The Influenza A Virus PB2, PA, NP, and M Segments Play a Pivotal Role during Genome Packaging
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Nucleolin-Mediated RNA Localization Regulates Neuron Growth and Cycling Cell Size
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Imaging Transcriptional Regulation of Eukaryotic mRNA Genes: Advances and Outlook
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Mechanisms of translational repression of the Smcp mRNA in round spermatids
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Chemosensation of Bacterial Secondary Metabolites Modulates Neuroendocrine Signaling and Behavior of C. elegans
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The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila
SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans
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Inhibition of intestinal tumor formation by deletion of the DNA methyltransferase 3a
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Spermatid Cyst Polarization in Drosophila Depends upon apkc and the CPEB Family Translational Regulator orb2
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Histone Methylation Restrains the Expression of Subtype-Specific Genes during Terminal Neuronal Differentiation in Caenorhabditis elegans
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Feedback Control of Gene Expression Variability in the Caenorhabditis elegans Wnt Pathway
Orsay,Santeuil and LeBlancviruses primarily infect intestinal cells in Caenorhabditis nematodes
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Regulation of maternal Wnt mRNA translation in C. elegans embryos
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Kimet al. Nature Genetics. 2013
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Discovery of J Chain in African Lungfish (Protopterus dolloi, Sarcopterygii) Using High Throughput Transcriptome Sequencing: Implications in Mucosal Immunity
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Guo et al. Journal of Cell Biology. 2013
Sex-lethal promotes nuclear retention of msl2 mRNA via interactions with the STAR protein HOW
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Whitehead et al. JCEM Online. 2013
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Microglial Stimulation of Glioblastoma Invasion Involves Epidermal Growth Factor Receptor (EGFR) and Colony Stimulating Factor 1 Receptor (CSF-1R) Signaling
Coniglioet al. Molecular Medicine. 2012
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Harriset al. Development. 2011
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Steineet al. Journal of Clinical Investigation. 2011
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Jiang et al. Cell Stem Cell. 2011
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Detection of Individual Endogenous RNA Transcripts In Situ Using Multiple Singly Labeled Probes
Rajet al. Methods in Enzymology. 2010
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bicoid mRNA localises to the Drosophila oocyte anterior by random Dyneinmediated transport and anchoring
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Truttmannet al. PLOS Genetics. 2016
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Tantirigama et al. The Journal of Comparative Neurology. 2016.
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Duet al. Developmental Biology. 2016
Germ Plasm Biogenesis—An Oskar-Centric Perspective
Lehmannet al. Current Topics in Developmental Biology. 2016
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Balla et al. PLOS Pathogens. 2015.
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Malone et al. Cold Spring Harbor Laboratory Press. 2014.
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SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans
Yücel et al. Developmental Biology, Elsevier. 2014.
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Spermatid Cyst Polarization in Drosophila Depends upon apkc and the CPEB Family Translational Regulator orb2
Xu et al. PLOS Genetics. 2014.
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Luminal signalling links cell communication to tissue architecture during organogenesis
Durdu et al. Nature Letter. 2014.
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Histone Methylation Restrains the Expression of Subtype-Specific Genes during Terminal Neuronal Differentiation in Caenorhabditis elegans
Zheng et al. PLOS Genetics. 2013.
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Feedback Control of Gene Expression Variability in the Caenorhabditis elegans Wnt Pathway
Orsay,Santeuil and LeBlancviruses primarily infect intestinal cells in Caenorhabditis nematodes
Franz et al. Virology, Elsevier. 2013.
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Regulation of maternal Wnt mRNA translation in C. elegans embryos
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Kennedy et al. Cell Article. 2013.
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Both the Caspase CSP-1 and a Caspase-Independent Pathway Promote Programmed Cell Death in Parallel to the Canonical Pathway for Apoptosis in Caenorhabditis elegans
Denning et al. PLOS Genetics. 2013
Deconvolving the roles of Wnt ligands and receptors in sensing and amplification
Tan et al. Molecular Systems Biology. 2013
Microsporidian Infection in a Free-Living Marine Nematode
Ardila-Garcia et al. Eukaryotic Cell. 2012.
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Ardila-Garciaet al. Eukaryotic Cell. 2012.
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Global Analysis of RNA Secondary Structure in Two Metazoans
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Burgaet al. Nature Letter. 2011.
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MAB-10/NAB acts with LIN-29/EGR to regulate terminal differentiation and the transition from larva to adult in C. elegans
Harriset al. Development. 2011
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Detection of Individual Endogenous RNA Transcripts In Situ Using Multiple Singly Labeled Probes
Rajet al. Methods in Enzymology. 2010
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PRAME as a Potential Target for Immunotherapy in Metastatic Uveal Melanoma
Gezginet al. JAMA Ophthalmol. 2017
Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization
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Differential Expression of Galectin-1 and Galectin-3 in Canine Nonmalignant and Malignant Mammary Tissues, and in Progression to Metastases in Mammary Tumours
Oliveira JT et al. Anticancer Research. 2014.
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Placental Specific mRNA in the Maternal Circulation Are Globally Dysregulated in Pregnancies Complicated by Fetal Growth Restriction
Whitehead et al. JCEM Online. 2013
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Microglial Stimulation of Glioblastoma Invasion Involves Epidermal Growth Factor Receptor (EGFR) and Colony Stimulating Factor 1 Receptor (CSF-1R) Signaling
Super-Resolution Single Molecule FISH at the Drosophila Neuromuscular Junction
Titlowet al. Methods in Molecular Biology. 2018
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Perryet al. Cell Reports. 0216
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Anvaret al. Genome Biology. 2018
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Torreet al. Cell Systems. 2018
Estrogen-dependent control and cell-to-cell variability of transcriptional bursting
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Wonget al. Nature Scientific Reports. 2018
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Bashiret al. Nature Communications. 2018
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Shuklaet al. The EMBO Journal. 2018
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Titlowet al. Methods in Molecular Biology. 2018
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The Germline-Specific Factor OEF-1 Facilitates Coordinated Progression Through Germ Cell Development in Caenorhabditis elegans
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Parkeret al. Molecular Cell. 2017
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Bellet al. Hormones and Behavior. 2017
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Jefcoateet al. Frontiers in Endocrinology. 2017
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Soareset al. Nucleic Acids Research. 2017
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Kimet al. Nucleic Acids Research. 2017
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Ietswaartet al. Cell Systems. 2017
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Adenylyl cyclase mRNA localizes to the posterior of polarized DICTYOSTELIUM cells during chemotaxis
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PRAME as a Potential Target for Immunotherapy in Metastatic Uveal Melanoma
Gezginet al. JAMA Ophthalmol. 2017
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Santangeloet al. Nucleic Acids Research. 2017
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Cassonet al. PLOS Pathogens. 2017
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Sexually dimorphic control of gene expression in sensory neurons regulates decision-making behavior in C. elegans
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Fletcheret al. PLOS Genetics. 2017
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Yuet al. Nature Communications. 2017
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bicoid mRNA localises to the Drosophila oocyte anterior by random Dyneinmediated transport and anchoring
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Wnt Ligands Secreted by Subepithelial Mesenchymal Cells Are Essential for the Survival of Intestinal Stem Cells and Gut Homeostasis
Valentaet al. Cell Reports. 2016
The Caenorhabditis elegans Protein FIC-1 Is an AMPylase That Covalently Modifies Heat-Shock 70 Family Proteins, Translation Elongation Factors and Histones
Truttmannet al. PLOS Genetics. 2016
CRISPR-Cas9 targeted deletion of the C9orf72 repeat expansion mutation corrects cellular phenotypes in patient-derived iPS cells
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High ImpactEnhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
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Trevino et al. Molecular Endocrinology. 2015
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Chandrakesan et al. Oncotarget. 2015
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Hypoxia Up-Regulates Galectin-3 in Mammary Tumor Progression and Metastasis
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Gibson et al. Royal Society of Chemistry. 2015
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Padovan-Merhar et al. Molecular Cell. 2015
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Susor et al. Nature Communications. 2015.
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Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically-disordered proteins in C. elegans
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Bushkin et al. The Journal of Immunology. 2014
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Mentink et al. Developmental Cell. 2014
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Barreca et al. Nature Blood Cancer Journal. 2014
Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity
Gordon et al. Nucleic Acids Research. 2014
Translational Control of the Oogenic Program by Components of OMA Ribonucleoprotein Particles in Caenorhabditis elegans
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The translation elongation factor eEF1A1 couples transcription to translation during heat shock response
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Multifunctional Roles for the Protein Translocation Machinery in RNA Anchoring to the Endoplasmic Reticulum*
Jagannathan et al. The Journal of Biological Chemistry. 2014.
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Rejuvenation of Meiotic Cohesion in Oocytes during Prophase I Is Required for Chiasma Maintenance and Accurate Chromosome Segregation
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Single yeast cells vary in transcription activity not in delay time after a metabolic shift
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The Translational Regulators GCN-1 and ABCF-3 Act Together to Promote Apoptosis in C. elegans
Hirose et al. PLOS Genetics. 2014
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Spermatid Cyst Polarization in Drosophila Depends upon apkc and the CPEB Family Translational Regulator orb2
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The Influenza A Virus PB2, PA, NP, and M Segments Play a Pivotal Role during Genome Packaging
One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis
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Decomposing spatially dependent and cell type specific contributions to cellular heterogeneity
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FRI0247 The Involvement of The Long Noncoding H19x in tGFβ Signaling and Its Profibrotic Effects in Systemic Sclerosis and Other Fibrotic Diseases
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piRNA-guided slicing of transposon transcripts enforces their transcriptional silencing via specifying the nuclear piRNA repertoire
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Little et al. Nature Cell Biology. 2015
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The Long Noncoding RNA lncTCF7 Promotes Self-Renewal of Human Liver Cancer Stem Cells through Activation of Wnt Signaling
Wang et al. Cell Stem Cell. 2015
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Wu et al. BMC Bioinformatics. 2015
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Determination of in vivo target search kinetics of regulatory noncoding RNA
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Ploidy variation in multinucleate cells changes under stress
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Myosin VI regulates gene pairing and transcriptional pause release in T cells
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The structure of human SFPQ reveals a coiled-coil mediated polymer essential for functional aggregation in gene regulation
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Licensing of Primordial Germ Cells for Gametogenesis Depends on Genital Ridge Signaling
The Bicoid Class Homeodomain Factors ceh-36/OTX and unc-30/PITX Cooperate in C. elegans Embryonic Progenitor Cells to Regulate Robust Development
Walton et al. PLOS Genetics. 2015
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PolyQ-dependent RNA–protein assemblies control symmetry breaking
Lee et al. The Journal of Cell Biology. 2015
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Coordinate post-transcriptional repression of Dpp-dependent transcription factors attenuates signal range during development
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The volumes and transcript counts of single cells reveal concentration homeostasis and capture biological noise
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Ascl2 Acts as an R-spondin/Wnt-Responsive Switch to Control Stemness in Intestinal Crypts
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Regulation of Mechanosensation in C. elegans through Ubiquitination of the MEC-4 Mechanotransduction Channel
Chen et al. The Journal of Neuroscience. 2015
Transcriptional Expression of Myelin Basic Protein in Oligodendrocytes Depends on Functional Syntaxin 4: a Potential Correlation with Autocrine Signaling
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Genome-Wide Analysis of Protein and mRNA Copy Numbers in Single Escherichia coli Cells with Single- Molecule Sensitivity
Taniguchi et al. Methods in Molecular Biology. 2015
Knockdown of Nuclear-Retained Long Noncoding RNAs Using Modifi ed DNA Antisense Oligonucleotides
lncRNA probe set validationLocalization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
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The DREAM complex promotes gene body H2A.Z for target repression
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Visualization of lncRNA by Single-Molecule Fluorescence In Situ Hybridization
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Labelling and imaging of single endogenous messenger RNA particles in vivo
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Bushkin et al. The Journal of Immunology. 2014
Profiling T Cell Activation Using Single-Molecule Fluorescence In Situ Hybridization and Flow Cytometry
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Bagniewska-Zadworna et al. Plant Science. 2014
Inside single cells: quantitative analysis with advanced optics and nanomaterials
Cui et al. WIREs Nanomedicine and Nanobiotechnology. 2014
High ImpactA Predictive Model of Bifunctional Transcription Factor Signaling during Embryonic Tissue Patterning
Junker et al. Cell, Developmental Cell. 2014
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Distribution and Characterization of Rhogocyte Cell Types in the Mantle Tissue of Haliotis laevigata
Sairi et al. Marine Biotechnoloy. 2014.
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Activation of the Chicken Type I Interferon Response by Infectious Bronchitis Coronavirus
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Autophagy supports genomic stability by degrading retrotransposon RNA
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Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast
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Cell Intrinsic Modulation of Wnt Signaling Controls Neuroblast Migration in C. elegans
Mentink et al. Developmental Cell. 2014
The role of antisense long noncoding RNA in small RNA-triggered gene activation
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Inter- and intratumoral heterogeneity of BCL2 correlates with IgH expression and prognosis in follicular lymphoma
Barreca et al. Nature Blood Cancer Journal. 2014
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Meisel et al. Cell, Elsevier . 2014
Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity
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Translational Control of the Oogenic Program by Components of OMA Ribonucleoprotein Particles in Caenorhabditis elegans
Spike et al. Genetics. 2014.
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The translation elongation factor eEF1A1 couples transcription to translation during heat shock response
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Multifunctional Roles for the Protein Translocation Machinery in RNA Anchoring to the Endoplasmic Reticulum*
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Rejuvenation of Meiotic Cohesion in Oocytes during Prophase I Is Required for Chiasma Maintenance and Accurate Chromosome Segregation
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A Gene Regulatory Network Controls the Binary Fate Decision of Rod and Bipolar Cells in the Vertebrate Retina
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Single yeast cells vary in transcription activity not in delay time after a metabolic shift
Schwabe et al. Nature Communications. 2014
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SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans
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Identification of genes in toxicity pathways of trinucleotide-repeat RNA in C. elegans
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Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells
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The embryo as a laboratory: Quantifying transcription in Drosophila
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Most Human Proteins Made in Both Nucleus and Cytoplasm Turn Over within Minutes
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The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila
SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans
Yücel et al. Developmental Biology, Elsevier. 2014.
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RNA sequencing in situ
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Grün et al. Nature Methods. 2014
Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta
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Inhibition of intestinal tumor formation by deletion of the DNA methyltransferase 3a
Weis et al. Nature Oncogene. 2014
Spermatid Cyst Polarization in Drosophila Depends upon apkc and the CPEB Family Translational Regulator orb2
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Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency
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Klemm et al. Nature Methods. 2014
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Lubeck et al. Nature Methods. 2014
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Facciponte et al. The Journal of Clinical Investigation. 2014
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Facciponte et al. Journal of Clinical Investigation. 2014
Differential Expression of Galectin-1 and Galectin-3 in Canine Nonmalignant and Malignant Mammary Tissues, and in Progression to Metastases in Mammary Tumours
Oliveira JT et al. Anticancer Research. 2014.
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Fusion FISH Imaging: Single-Molecule Detection of Gene Fusion Transcripts In Situ
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Junkeret al. Cell Minireview. 2014
The functional characterization of long noncoding RNA SPRY4-IT1 in human melanoma cells
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Fold Change of Nuclear NF-kB Determines TNF-Induced Transcription in Single Cells
Lee et al. Molecular Cell. 2014.
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Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development
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Singel et al. Breast Cancer Research. 2014.
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Expression of the Developmental Transcription Factor Fezf2 Identifies a Distinct Subpopulation of Layer 5 Intratelencephalic-Projection Neurons in Mature Mouse Motor Cortex
Tantirigama et al. the Journal of Neuroscience. 2014.
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Aberrant Patterns of X Chromosome Inactivation in a New Line of Human Embryonic Stem Cells Established in Physiological Oxygen Concentrations
Oliveira Georges et al. Stem Cell Rev and Rep. 2014.
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Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm
Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta
Finn et al. Developmental Biology, Elsevier. 2014.
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KIF14 Promotes AKT Phosphorylation and Contributes to Chemoresistance in Triple-Negative Breast Cancer
Singel et al. Neoplasia. 2014.
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Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development
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Global Bidirectional Transcription of the Epstein-Barr Virus Genome during Reactivation
O'Grady et al. JVI, Journal of Virology. 2014
Global Bidirectional Transcription of the Epstein-Barr Virus Genome 1 During Reactivation
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Small alveolar macrophages are infected preferentially by HIV and exhibit impaired phagocytic function
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Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
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Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation
Alvarez-Dominguezet al. Blood Journal. 2014
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A microRNA-based single-gene circuit buffers protein synthesis rates against perturbations
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Long noncoding RNA-mediated intrachromosomal interactions promote imprinting at the Kcnq1 locus
Zhang et al. Journal of Cell Biology. 2014
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Nup98 promotes antiviral gene expression to restrict RNA viral infection in Drosophila
Identification of a novel multiple kinase inhibitor with potent antiviral activity against influenza virus by reducing viral polymerase activity
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KO lncRNAMultiple knockout mouse models reveal lincRNAs are required for life and brain development
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Mitochondria Coordinate Sites of Axon Branching through Localized Intra-axonal Protein Synthesis
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Histone Methylation Restrains the Expression of Subtype-Specific Genes during Terminal Neuronal Differentiation in Caenorhabditis elegans
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Scaffold function of long non-coding RNA HOTAIR in protein ubiquitination
Yoon et al. Nature Communications. 2013
High ImpactFeedback Control of Gene Expression Variability in the Caenorhabditis elegans Wnt Pathway
High ImpactFeedback Control of Gene Expression Variability in the Caenorhabditis elegans Wnt Pathway
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Regulation of maternal Wnt mRNA translation in C. elegans embryos
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Dampening of expression oscillations by synchronous regulation of a microRNA and its target
Kimet al. Nature Genetics. 2013
Nuclear import of APOBEC3F-labeled HIV-1 preintegration complexes
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Determinants of robustness in spindle assembly checkpoint signalling
Heinrich et al. Nature Cell Biology. 2013.
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Stochastic Responses Are Not Left to Pure ‘‘Chance’’
High ImpactChromosomal Contact Permits Transcription between Coregulated Genes
A dynamic population of stromal cells contributes to the follicle stem cell niche in the Drosophila ovary
Sahai-Hernandez et al. The Company of Biologists Ltd., Development. 2013
Identifying Division Symmetry of Mouse Embryonic Stem Cells: Negative Impact of DNA Methyltransferases on Symmetric Self-Renewal
Jasnos et al. Stem Cell Reports. 2013.
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A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity
Ashe et al. eLIFE. 2013.
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Image-based transcriptomics in thousands of single human cells at single-molecule resolution
Battich et al. Nature Methods. 2013
High ImpactMeasurement and modeling of transcriptional noise in the cell cycle regulatory network
Orsay, Santeuil and Le Blanc viruses primarily infect intestinal cells in Caenorhabditis nematodes
Franz et al. Virology, Elsevier. 2013.
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IFI16 senses DNA forms of the lentiviral replication cycle and controls HIV-1 replication
Jakobsen et al. PNAS PLUS. 2013
Translation- and SRP-independent mRNA targeting to the endoplasmic reticulum in the yeast Saccharomyces cerevisiae
Kraut-Cohen et al. Molecular Biology Cell . 2013.
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Turbo FISH: A Method for Rapid Single Molecule RNA FISH
High ImpactNonautonomous Regulation of Neuronal Migration by Insulin Signaling, DAF-16/FOXO, and PAK-1
Kennedy et al. Cell Article. 2013.
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Tumour angiogenesis regulation by the miR-200 family
Peot et al. Nature Communications. 2013.
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Barriers to transmission of transcriptional noise in a c-fos c-jun pathway
Shah et al. Molecular Systems Biology. 2013
Single Molecule Fluorescence Approaches Shed Light on Intracellular RNAs
Pitchiaya et al. Chemical Reviews. 2013
SNP-FISH, High ImpactAllele-specific detection of single mRNA molecules in situ
Hansen et al. Nature Communications. 2013
High ImpactVisualizing SN Vs toquantify allele-specific expression in single cells
Levesque et al. Nature Communications. 2013
High ImpactSingle-molecule mRNA detection and counting in mammalian tissue
Lyubimova et al. Nature Protocol. 2013
Transcription termination controls prophage maintenance in Escherichia coli genomes
Menouni et al. PNAS. 2013.
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Gene-Specific Transcriptional Mechanisms at the Histone Gene Cluster Revealed by Single-Cell Imaging
Guglielmi et al. Molecular Cell. 2013
Discovery of J Chain in African Lungfish (Protopterus dolloi, Sarcopterygii) Using High Throughput Transcriptome Sequencing: Implications in Mucosal Immunity
Stochastic Cytokine Expression Induces Mixed T Helper Cell States
Fang et al. PLOS Biology. 2013
High ImpactSingle-Cell Analysis Reveals that Expression of Nanog Is Biallelic and Equally Variable as that of Other Pluripotency Factors in Mouse ESCs
Faddahet al. Cell Stem Cell. 2013
High ImpactBimodal expression of PHO84 is modulated by early termination of antisense transcription
Castelnuovo et al. Nature structural & molecular biology. 2013
High ImpactProtein Aggregation Behavior Regulates Cyclin Transcript Localization and Cell-Cycle Control
High ImpactProtein Aggregation Behavior Regulates Cyclin Transcript Localization and Cell-Cycle Control
Lee et al. Developmental Cell. 2013.
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Transcription-Factor-Mediated DNA Looping Probed by High-Resolution, Single-Molecule Imaging in Live E. coli Cells
Hensel et al. PLOS Biology. 2013.
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Visualization and Analysis of mRNA Molecules Using Fluorescence In Situ Hybridization in Saccharomyces cerevisiae
McIsaac et al. Jove. 2013.
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Injury-induced BMP signaling negatively regulates Drosophila midgut homeostasis
Guo et al. Journal of Cell Biology. 2013
linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis
Maamar et al. Genes & Development. 2013
Sex-lethal promotes nuclear retention of msl2 mRNA via interactions with the STAR protein HOW
Graindorge et al. Genes & Development. 2013
High ImpactMeasuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization
Skinner et al. Nature Protocol. 2013.
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Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization
Skinner et al. Nature Protocol. 2013
mRNA encoding WAVE–Arp2/3-associated proteins is co-localized with foci of active protein synthesis at the leading edge of MRC5 fibroblasts during cell migration
Willett et al. Biochem Journal. 2013.
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Colocalization of Different Influenza Viral RNA Segments in the Cytoplasm before Viral Budding as Shown by Single-molecule Sensitivity FISH Analysis
Chou et al. PLOS Pathogens. 2013.
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Counting Small RNA in Pathogenic Bacteria
Shepherd et al. Analytical Chemistry. 2013.
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Expanding the Diversity of Imaging-Based RNAi Screen Applications Using Cell Spot Microarrays
Rantala et al. Microarrays. 2013
Single-cell gene expression profiling reveals functional heterogeneity of undifferentiated human epidermal cells
Tan et al. Development and Stem Cells. 2013.
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Digoxin Suppresses HIV-1 Replication by Altering Viral RNA Processing
Wong et al. PLOS Pathogens. 2013.
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Circular RNAs are a large class of animal RNAs with regulatory potency
Memczak et al. Nature Article. 2013.
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Both the Caspase CSP-1 and a Caspase-Independent Pathway Promote Programmed Cell Death in Parallel to the Canonical Pathway for Apoptosis in Caenorhabditis elegans
Denning et al. PLOS Genetics. 2013
High ImpactSingle-chromosome transcriptional profiling reveals chromosomal gene expression regulation
Levesque et al. Nature Communications. 2013
Placental Specific mRNA in the Maternal Circulation Are Globally Dysregulated in Pregnancies Complicated by Fetal Growth Restriction
Whitehead et al. JCEM Online. 2013
Coactivators enable glucocorticoid receptor recruitment to fine-tune estrogen receptor transcriptional responses
Bolt et al. Nucleic Acids Research. 2013.
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Depletion of cellular polyamines, spermidine and spermine, causes a total arrest in translation and growth in mammalian cells
Mandal et al. PNAS. 2013.
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A versatile genome-scale PCR-based pipeline for high-definition DNA FIISH
Bienko et al. Nature Communications. 2013
Single-Cell Analysis of Ribonucleotide Reductase Transcriptional and Translational Response to DNA Damage
Mazumder et al. Molecular Cell Biology. 2013
Single-molecule fluorescence in situ hybridization: Quantitative imaging of single RNA molecules
High ImpactSystematic Identification of Signal-Activated Stochastic Gene Regulation
Investigating transcriptional states at single-cell-resolution
Tischler et al. Current Opinion in Biotechnology. 2013
High ImpactControl of somatic tissue differentiation by the long non-coding RNA TINCR
Kretz et al. Nature Research Letter. 2013.
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Pint lincRNA connects the p53 pathway with epigenetic silencing by the Polycomb repressive complex 2
Marín-Béjar et al. Genome Biology. 2013
Using variability in gene expression as a tool for studying gene regulation
Padovan-Merhar et al. WIREs Syst Biol Med. 2013
Single-Molecule Resolution Fluorescent In Situ Hybridization (smFISH) in the Yeast S. cerevisiae
Rahman et al. Methods of Molecular Biology. 2013
Deconvolving the roles of Wnt ligands and receptors in sensing and amplification
Tan et al. Molecular Systems Biology. 2013
High ImpactEmbryonic Priming of a miRNA Locus Predetermines Postmitotic Neuronal Left/Right Asymmetry in C. elegans
Cochellaet al. Cell. 2012.
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Microsporidian Infection in a Free-Living Marine Nematode
Ardila-Garcia et al. Eukaryotic Cell. 2012.
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Microsporidian Infection in a Free-Living Marine Nematode
Ardila-Garciaet al. Eukaryotic Cell. 2012.
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The CPEB Protein Orb2 Has Multiple Functions during Spermatogenesis in Drosophila melanogaster
Xu et al. PLOS Genetics. 2012.
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Removal of Polycomb Repressive Complex 2 Makes C. elegans Germ Cells Susceptible to Direct Conversion into Specific Somatic Cell Types
Patelet al. Cell Reports. 2012
Quadraplex MultiplexA continuum of transcriptional identities visualized by combinatorial fluorescent in situ hybridization
Inducible Control of Subcellular RNA Localization Using a Synthetic Protein-RNA Aptamer Interaction
Belmontet al. PLOS ONE. 2012.
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Asymmetric Segregation of the Double-Stranded RNA Binding Protein Staufen2 during Mammalian Neural Stem Cell Divisions Promotes Lineage Progression
Kuseket al. Cell Stem Cell. 2012.
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Lgr5+ve Stem/Progenitor Cells Contribute to Nephron Formation during Kidney Development
Barkeret al. Cell Reports. 2012
High ImpactSingle-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase
High ImpactExtradenticle and Homothorax Control Adult Muscle Fiber Identity in Drosophila
Bryantsevet al. Developmental Cell. 2012
High ImpactRNA imaging in situ
Bakeret al. Nature Methods. 2012
High ImpactTPP1 OB-Fold Domain Controls Telomere Maintenance by Recruiting Telomerase to Chromosome Ends
Zhonget al. Cell. 2012.
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The Influenza A Virus PB2, PA, NP, and M Segments Play a Pivotal Role during Genome Packaging
High Impact, super resolutionSingle-cell systems biology by super-resolution imaging and combinatorial labeling
Lubecket al. Nature Methods. 2012
One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis
Neuronal mRNAs travel singly into dendrites
High ImpactSingle-mRNA counting using fluorescent in situ hybridization in budding yeast
Trceket al. Nature Protocol. 2012
High ImpactGlobal Analysis of RNA Secondary Structure in Two Metazoans
Concentration-Dependent Requirement for Local Protein Synthesis in Motor Neuron Subtype-Specific Response to Axon Guidance Cues
Nedelecet al. Journal of Neuorscience. 2012.
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The P granule component PGL-1 promotes the localization and silencing activity of the PUF protein FBF-2 in germline stem cells
Voronina et al. Development and Stem Cells. 2012.
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Dynamics of protein noise can distinguish between alternate sources of gene-expression variability
Singh et al. Molecular Systems Biology. 2012
Identification of molecular compartments and genetic circuitry in the developing mammalian kidney
Microglial Stimulation of Glioblastoma Invasion Involves Epidermal Growth Factor Receptor (EGFR) and Colony Stimulating Factor 1 Receptor (CSF-1R) Signaling
Coniglioet al. Molecular Medicine. 2012
Evaluating Individual mRNA Molecules Detection Techniques in Microscope Images
Khutlandet al. Conference Paper. 2012
Gene location and DNA density determine transcription factor distributions in Escherichia coli
Kuhlmanet al. Molecular Systems Biology. 2012.
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Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes
Cremeret al. Methods in Molecular Biology. 2012
High ImpactPredicting mutation outcome from early stochastic variation in genetic interaction partners
Burgaet al. Nature Letter. 2011.
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Single-cell analysis: The Deepest Differences
Shared gene expression in distinct neurons expressing common selector genes
Topalidou et al. PNAS. 2011.
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Single-Molecule Imaging of Transcriptionally Coupled and Uncoupled Splicing
High ImpactncRNA- and Pc2 Methylation-Dependent GeneRelocationbetween NuclearStructures Mediates Gene Activation Programs
High ImpactStellaris™ fluorescence in situ hybridization (FISH) probes: a powerful tool for mRNA detection
Orjalo et al. Nature Methods. 2011.
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MAB-10/NAB acts with LIN-29/EGR to regulate terminal differentiation and the transition from larva to adult in C. elegans
Harriset al. Development. 2011
Cell-to-cell variability of alternative RNA splicing
Wakset al. Molecular Systems Biology. 2011
RNA sequencing reveals two major classes of gene expression levels in metazoan cells
Hebenstreit et al. Molecular Systems Biology. 2011
Visualization of single mRNAs reveals temporal association of proteins with microRNA-regulated mRNA
Shihet al. Nucleic Acids Research. 2011
Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer
Steineet al. Journal of Clinical Investigation. 2011
Neuroblast migration along the anteroposterior axis of C. elegans is controlled by opposing gradients of Wnts and a secreted Frizzled-related protein
Harterinket al. Development. 2011
High ImpactValidating transcripts with probes and imaging technology
Itzkovitzet al. Nature Methods. 2011
Caenorhabditis elegans aristaless/Arx gene alr-1 restricts variable gene expression
High ImpactEGFR/Ras/MAPK Signaling Mediates Adult Midgut Epithelial Homeostasis and Regeneration in Drosophila
Jiang et al. Cell Stem Cell. 2011
Single Molecule Imaging of RNA In Situ
Batishet al. Methods Molecular Biology. 2011
High ImpactVariability in gene expression underlies incomplete penetrance
Rajet al. Nature Article. 2010
High ImpactVariability in gene expression underlies incomplete penetrance
Detection of Individual Endogenous RNA Transcripts In Situ Using Multiple Singly Labeled Probes
Rajet al. Methods in Enzymology. 2010
High ImpactMaking the message clear: visualizing mRNA localization
Imaging single mRNA molecules in yeast
Youket al. Methods in Enzymology. 2010
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
Single-Molecule Approaches to Stochastic Gene Expression
Rajet al. Annual Review of Biophysics. 2009
High ImpactImaging individual mRNA molecules using multiple singly labeled probes
Rajet al. Nature Brief Communications. 2008
Are genes switched on when they kiss?
De novo translation initiation on membrane-bound ribosomes as a mechanism for localization of cytosolic protein mRNAs to the endoplasmic reticulum
Stellaris RNA FISH citation generator
Don’t get left out of the Citation Center due to incomplete citations. Below, you will find convenient forms as well as cut and paste Stellaris RNA FISH citations where you can <insert your relevant product information>. This will make it very easy for other scientists to locate and cross-reference the RNA FISH probe sets that you used for your publication and help to grow the cache of knowledge that we are building together.
Custom Stellaris™ FISH Probes were designed against <your RNA of interest (include NM# and nucleotides covered if relevant> by utilising the Stellaris RNA FISH Probe Designer (Biosearch Technologies, Inc., Petaluma, CA) available online at www.biosearchtech.com/stellarisdesigner (version #). The <your RNA of interest> were hybridised with the <your dye of choice> Stellaris RNA FISH Probe set labelled with (Biosearch Technologies, Inc.), following the manufacturer’s instructions available online at www.biosearchtech.com/stellarisprotocols. <Describe any deviations from the published protocol or short summary of what was actually performed>.
Stellaris™ FISH Probes recognizing <catalogued gene set name> and labelled with<your dye of choice> (Catalog #, Biosearch Technologies, Inc., Petaluma, CA) were hybridised to <samples>, following the manufacturer’s instructions available online at www.biosearchtech.com/stellarisprotocols. <Describe any deviations from the published protocol or short summary of what was actually performed>.
Custom Stellaris™ FISH Probes recognising <your RNA of interest (include NM# and nucleotides covered if relevant)>and labeled with <your dye of choice>, were purchased from Biosearch Technologies, Inc. (Petaluma, CA). Probe set sequences utilised in the experiments have been previously described <cite published manuscript>. The <samples> were hybridised with the <your RNA of interest> Stellaris FISH Probe set, following the manufacturer’s instructions available online at www.biosearchtech.com/stellarisprotocols. <Describe any deviations from the published protocol or short summary of what was actually performed>.
Custom 3' amine oligos in plates were designed against <your RNA of interest (include NM# and nucleotides covered if relevant)> by utilising the Stellaris™ RNA FISH Probe Designer (Biosearch Technologies, Inc., Petaluma, CA) available online at www.biosearchtech.com/stellarisdesigner (version #). Probes were labeled with <your dye of choice>using <insert your labeling protocol or citation of previously published labeling protocol>. The<samples> were hybridised with <your RNA of interest> the oligonucleotides (Biosearch Technologies, Inc.), following the manufacturer’s instructions available online at www.biosearchtech.com/stellarisprotocols. <Describe any deviations from the published protocol or short summary of what was actually performed>.
Custom 3' amine oligos in plates recognising <your RNA of interest (include NM# and nucleotides covered if relevant)> were purchased from Biosearch Technologies, Inc. (Petaluma, CA). Probe set sequences utilized in the experiments have been previously described in <cite published manuscript>. Probes were labeled using <your dye of choice>. The <samples> were hybridised with <your RNA of interest> the oligonucleotides (Biosearch Technologies, Inc.), following the manufacturer’s instructions available online at www.biosearchtech.com/stellarisprotocols (access date). <Describe any deviations from the published protocol or short summary of what was actually performed>.