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Oligonucleotides (whether synthetic or natural) may be purified by a number of techniques, including polyacrylamide gel electrophoresis and high performance liquid chromatography (either by ion exchange or reverse-phase methods). Synthetic DNA can be conveniently de-salted and purified by reverse-phase low-pressure separation on BTI's SuperPure (SP-1000) columns. BTI's SuperPure Columns are intended for reverse-phase purification of 5'-DMT oligonucleotides followed by on-column detritylation. The method relies on strong binding between the 5'-DMT protected product and a hydrophobic optimized polymer packing (polystyrene), thus allowing separation from truncated sequences which, due to a lack of DMT group, do not bind. Treatment with acid removes the DMT group from the product, the desired product (free from organic residues) is eluted with 20% acetonitrile. The method is rapid, efficient and permits many samples to be purified simultaneously. The SuperPure column has capacity to handle crude, cleaved DNA from a 50 nmol scale synthesis. The purified yield will depend, in each case, on sequence length and the quality of the crude sample.

Properties:

Product usage:

    1. Program DNA synthesizer to leave terminal 5'-DMT group attached; 2. Cleave and deprotect product with conc. aqueous ammonia (5 hours at 60 °C for standard deprotection procedure); 3. Evaporate cleavage solution to dryness; 4. Re-suspend in 0.2 ml 0.1N TEAA or H2O; 5. Pre-equilibrate column by passing 2 column volumes (CVs) of acetonitrile through the column; 6. Repeat with 3 CVs 1N TEAA (triethylamine acetate ; 7. Take the oligo solution of step 4 and apply slowly to the column while collecting effluent in a separate micro-centrifuge tube. Reload effluent and pass once more through column (optional); 8. Pass 3 CVs of 2.8% ammonia solution slowly through the column; 9. Wash by slow passage of 2 CVs water; 10. Pass 2 CVs of 2.5% TFA through the column, wait 5 minutes; 11. Pass 3 or more CVs of water through column. Check to see pH is neutral. 12. Slowly pass 2 CVs 20% acetonitrile through the column, collecting effluent containing the desired purified product in a labeled microcentrifuge tube;. 13. Speedvac ™ the solution to dryness, analyze and use as desired.

Storage and handling:

  • Shipping conditions:

    Ambient

  • Storage conditions:

    Room Temperature

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